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Author Details

Stian Soiland-Reyes
The University of Manchester
2008
17
12
Mohammad Sadnan Al Manir (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37872541Federated causal inference based on real-world observational data sources: application to a SARS-CoV-2 vaccine effectiveness assessment.BMC Med Res Methodol2023
37872541Federated causal inference based on real-world observational data sources: application to a SARS-CoV-2 vaccine effectiveness assessment.BMC Med Res Methodol2023
35324885Ten simple rules for making a software tool workflow-ready.PLoS Comput Biol2022
35324885Ten simple rules for making a software tool workflow-ready.PLoS Comput Biol2022
34804501Perspectives on automated composition of workflows in the life sciences.F1000Res2021
33817033Semantic micro-contributions with decentralized nanopublication services.PeerJ Comput Sci2021
34804501Perspectives on automated composition of workflows in the life sciences.F1000Res2021
33817033Semantic micro-contributions with decentralized nanopublication services.PeerJ Comput Sci2021
31506435BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows.Sci Data2019
31675414Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv.Gigascience2019
31506435BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows.Sci Data2019
31675414Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv.Gigascience2019
30596645Enabling precision medicine via standard communication of HTS provenance, analysis, and results.PLoS Biol2018
30596645Enabling precision medicine via standard communication of HTS provenance, analysis, and results.PLoS Biol2018
27899646FAIRDOMHub: a repository and collaboration environment for sharing systems biology research.Nucleic Acids Res2017
28662064Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.PLoS Biol2017
27899646FAIRDOMHub: a repository and collaboration environment for sharing systems biology research.Nucleic Acids Res2017
28662064Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.PLoS Biol2017
25276335Structuring research methods and data with the research object model: genomics workflows as a case study.J Biomed Semantics2014
25494900COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.BMC Bioinformatics2014
25276335Structuring research methods and data with the research object model: genomics workflows as a case study.J Biomed Semantics2014
25472764Community-driven development for computational biology at Sprints, Hackathons and Codefests.BMC Bioinformatics2014
25472764Community-driven development for computational biology at Sprints, Hackathons and Codefests.BMC Bioinformatics2014
25494900COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.BMC Bioinformatics2014
23640334The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.Nucleic Acids Res2013
24267948PAV ontology: provenance, authoring and versioning.J Biomed Semantics2013
23640334The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.Nucleic Acids Res2013
24267948PAV ontology: provenance, authoring and versioning.J Biomed Semantics2013
21044328CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.BMC Bioinformatics2010
21044328CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.BMC Bioinformatics2010
18056069Automated manipulation of systems biology models using libSBML within Taverna workflows.Bioinformatics2008
18687127Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.BMC Bioinformatics2008
18687127Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.BMC Bioinformatics2008
18056069Automated manipulation of systems biology models using libSBML within Taverna workflows.Bioinformatics2008
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Collaborators

University of Manchester
Co-authored papers 12
Leiden Institute of Advanced Computer Science, Leiden University
Co-authored papers 5
The University of Manchester
Co-authored papers 4
Inc. 137 Montague Street
Co-authored papers 3
University of Manchester
Co-authored papers 3
University of Bergen
Co-authored papers 2
University of Manchester
Co-authored papers 2
Vrije Universiteit Amsterdam
Co-authored papers 2
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Babraham Institute
Co-authored papers 2
Institut Francais de Bioinformatique, CNRS
Co-authored papers 2
Co-authored papers 2
University of Manchester
Co-authored papers 2
Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Co-authored papers 2
Institute of Data Science, Maastricht University
Co-authored papers 2
Stellenbosch University, Vrije Universiteit Amsterdam
Co-authored papers 2
Novo Nordisk Foundation Centre for Biosustainability, Technical University of Denmark
Co-authored papers 2
Rostock University Medical Center
Co-authored papers 2
Co-authored papers 1
Oregon Health & Science University
Co-authored papers 1
Co-authored papers 1
Leiden University Medical Center
Co-authored papers 1
University of Minnesota
Co-authored papers 1
Co-authored papers 1
Newcastle University
Co-authored papers 1
University of Cambridge
Co-authored papers 1
Eagle Genomics Ltd
Co-authored papers 1
Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
Co-authored papers 1
University of Melbourne
Co-authored papers 1
Technical University of Denmark
Co-authored papers 1