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Author Details

Roger E Bumgarner
University of Washington
1992
114
46
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34411722Cutibacterium recovered from deep specimens at the time of revision shoulder arthroplasty samples has increased biofilm-forming capacity and hemolytic activity compared with Cutibacterium skin isolates from normal subjects.J Shoulder Elbow Surg2022
36145469Genomic Islands Shape the Genetic Background of Both JP2 and Non-JP2 <i>Aggregatibacter actinomycetemcomitans</i>.Pathogens2022
35176494What do positive and negative Cutibacterium culture results in periprosthetic shoulder infection mean? A multi-institutional control study.J Shoulder Elbow Surg2022
33790266Bacterial cyclic diguanylate signaling networks sense temperature.Nat Commun2021
32417046Cutibacterium subtype distribution on the skin of primary and revision shoulder arthroplasty patients.J Shoulder Elbow Surg2020
31645372Cutibacterium acnes Isolates from Deep Tissue Specimens Retrieved during Revision Shoulder Arthroplasty: Similar Colony Morphology Does Not Indicate Clonality.J Clin Microbiol2020
31327397Letter to the Editor regarding Qui et al: "Cutibacterium acnes and the shoulder microbiome".J Shoulder Elbow Surg2019
31816971Transcriptomic Analysis of <i>Aggregatibacter actinomycetemcomitans</i> Core and Accessory Genes in Different Growth Conditions.Pathogens2019
30266904Temporal genetic association and temporal genetic causality methods for dissecting complex networks.Nat Commun2018
28336586Draft Genome Sequence of <i>Tannerella forsythia</i> Clinical Isolate 9610.Genome Announc2017
26893419High-Quality Draft Genome Sequence of Low-pH-Active Veillonella parvula Strain SHI-1, Isolated from Human Saliva within an In Vitro Oral Biofilm Model.Genome Announc2016
26420795Evolutionary Divergence of Aggregatibacter actinomycetemcomitans.J Dent Res2016
27196608Variable Nitrogen Fixation in Wild Populus.PLoS One2016
27490177Human Serum-Specific Activation of Alternative Sigma Factors, the Stress Responders in Aggregatibacter actinomycetemcomitans.PLoS One2016
26829887Digital detection of endonuclease mediated gene disruption in the HIV provirus.Sci Rep2016
26847892Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont.Genome Announc2016
27056232Draft Genome Sequence of Low-Passage Clinical Isolate Porphyromonas gingivalis MP4-504.Genome Announc2016
27053589Propionibacterium in Shoulder Arthroplasty: What We Think We Know Today.J Bone Joint Surg Am2016
25693846Comparative genomic analysis of seven Mycoplasma hyosynoviae strains.Microbiologyopen2015
26244386Resistance detected by pyrosequencing following zidovudine monotherapy for prevention of HIV-1 mother-to-child-transmission.AIDS2015
26317928Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection.PLoS One2015
26372270Lack of viral control and development of combination antiretroviral therapy escape mutations in macaques after bone marrow transplantation.AIDS2015
24675846Genome Sequence of a Presumptive Mannheimia haemolytica Strain with an A1/A6-Cross-Reactive Serotype from a White-Tailed Deer (Odocoileus virginianus).Genome Announc2014
25189591Genome-Wide Association Studies of Virulent and Avirulent Haemophilus parasuis Serotype 4 Strains.Genome Announc2014
25187583Propionibacterium persists in the skin despite standard surgical preparation.J Bone Joint Surg Am2014
24740080Validation of an oligonucleotide ligation assay for quantification of human immunodeficiency virus type 1 drug-resistant mutants by use of massively parallel sequencing.J Clin Microbiol2014
24903877Genome Sequences of Seven Mycoplasma hyosynoviae Strains Isolated from the Joint Tissue of Infected Swine (Sus scrofa).Genome Announc2014
24926047Genome sequences of porcine epidemic diarrhea virus: in vivo and in vitro phenotypes.Genome Announc2014
23104812Characterization of the effects of an rpoC mutation that confers resistance to the Fst peptide toxin-antitoxin system toxin.J Bacteriol2013
24306704Origin of propionibacterium in surgical wounds and evidence-based approach for culturing propionibacterium from surgical sites.J Bone Joint Surg Am2013
23824402Genomic Stability of Aggregatibacter actinomycetemcomitans during Persistent Oral Infection in Human.PLoS One2013
23194436Comparative genomic hybridization and transcriptome analysis with a pan-genome microarray reveal distinctions between JP2 and non-JP2 genotypes of Aggregatibacter actinomycetemcomitans.Mol Oral Microbiol2013
23288464Overview of DNA microarrays: types, applications, and their future.Curr Protoc Mol Biol2013
22019378A prioritization analysis of disease association by data-mining of functional annotation of human genes.Genomics2012
23341849Metagenomic analysis of subgingival microbiota following non-surgical periodontal therapy: a pilot study.Open Dent J2012
22719852Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria.PLoS One2012
22898396Integrating external biological knowledge in the construction of regulatory networks from time-series expression data.BMC Syst Biol2012
22509135Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation.PLoS Biol2012
22422086Laser capture microdissection enables cellular and molecular studies of tooth root development.Int J Oral Sci2012
22408240Genome sequence of a serotype b non-JP2 aggregatibacter actinomycetemcomitans strain, ANH9381, from a periodontally healthy individual.J Bacteriol2012
21725020Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales.J Bacteriol2011
22084118Construction of regulatory networks using expression time-series data of a genotyped population.Proc Natl Acad Sci U S A2011
21811606Identification of the pangenome and its components in 14 distinct Aggregatibacter actinomycetemcomitans strains by comparative genomic analysis.PLoS One2011
21571999Genome sequence of a novel species, Propionibacterium humerusii.J Bacteriol2011
19966002Genome sequences of Mannheimia haemolytica serotype A2: ovine and bovine isolates.J Bacteriol2010
20802477The genome of the domesticated apple (Malus ÿ domestica Borkh.).Nat Genet2010
20825670Markedly different genome arrangements between serotype a strains and serotypes b or c strains of Aggregatibacter actinomycetemcomitans.BMC Genomics2010
20974999High-density lipoprotein suppresses the type I interferon response, a family of potent antiviral immunoregulators, in macrophages challenged with lipopolysaccharide.Circulation2010
20920355A three-way comparative genomic analysis of Mannheimia haemolytica isolates.BMC Genomics2010
20348265Genome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1.J Bacteriol2010
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Collaborators

Center for Phenomic Health, The Buck Institute for Research on Aging
Co-authored papers 13
University of Washington
Co-authored papers 8
Fred Hutchinson Cancer Center
Co-authored papers 8
Fred Hutchinson Cancer Research Center
Co-authored papers 5
Co-authored papers 5
Icahn School of Medicine at Mount Sinai
Co-authored papers 5
The Third People's Hospital of Da Lian
Co-authored papers 4
University of Washington School of Medicine
Co-authored papers 4
Co-authored papers 4
University of Washington
Co-authored papers 4
Co-authored papers 4
Novo Nordisk Research Centre
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
University of Washington
Co-authored papers 3
The University of Auckland
Co-authored papers 3
Pacific Northwest National Laboratory
Co-authored papers 3
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Co-authored papers 2
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 2
European Bioinformatics Institute
Co-authored papers 2
Co-authored papers 2
Harvard T. H. Chan School of Public Health
Co-authored papers 2
Oxford e-Research Centre, University of Oxford
Co-authored papers 2
Fred Hutchinson Cancer Center
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
The University of Melbourne
Co-authored papers 2
Institute of Cancer and Genetics, University of Edinburgh
Co-authored papers 2
University of Dundee
Co-authored papers 2
Prostate Cancer Research Center, Tampere University and Tays Cancer Center
Co-authored papers 2