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Author Details

Wenying Yan
Center for Systems Biology, Medical College of Soochow University
2010
47
18
PMIDPaper TitleJournal TitlePublished Year
35085089Next-Generation Sequencing Markup Language (NGSML): A Medium for the Representation and Exchange of NGS Data.IEEE/ACM Trans Comput Biol Bioinform2023
36834664A Protein Co-Conservation Network Model Characterizes Mutation Effects on SARS-CoV-2 Spike Protein.Int J Mol Sci2023
36768540DeepTP: A Deep Learning Model for Thermophilic Protein Prediction.Int J Mol Sci2023
36710342Integrated multi-dimensional analysis highlights DHCR7 mutations involving in cholesterol biosynthesis and contributing therapy of gastric cancer.J Exp Clin Cancer Res2023
36528805A comprehensive review on knowledge graphs for complex diseases.Brief Bioinform2023
36864416MiR-200/183 family-mediated module biomarker for gastric cancer progression: an AI-assisted bioinformatics method with experimental functional survey.J Transl Med2023
36272033SLC6A14 facilitates epithelial cell ferroptosis via the C/EBPβ-PAK6 axis in ulcerative colitis.Cell Mol Life Sci2022
34277623Deciphering the <i>in vivo</i> Dynamic Proteomics of Mesenchymal Stem Cells in Critical Limb Ischemia.Front Cell Dev Biol2021
33565875Network-Based Target Prioritization and Drug Candidate Identification for Multiple Sclerosis: From Analyzing "Omics Data" to Druggability Simulations.ACS Chem Neurosci2021
33669233Knowledge-Guided "Community Network" Analysis Reveals the Functional Modules and Candidate Targets in Non-Small-Cell Lung Cancer.Cells2021
33756038H19 promotes aerobic glycolysis, proliferation, and immune escape of gastric cancer cells through the microRNA-519d-3p/lactate dehydrogenase A axis.Cancer Sci2021
33634974MiR-378a-3p as a putative biomarker for hepatocellular carcinoma diagnosis and prognosis: Computational screening with experimental validation.Clin Transl Med2021
32425783Identifying Drug Targets in Pancreatic Ductal Adenocarcinoma Through Machine Learning, Analyzing Biomolecular Networks, and Structural Modeling.Front Pharmacol2020
33135342Evaluation of plasma exosomal microRNAs as circulating biomarkers for progression and metastasis of gastric cancer.Clin Transl Med2020
33330622ANCA: A Web Server for Amino Acid Networks Construction and Analysis.Front Mol Biosci2020
32241464Understanding the cross-talk between host and virus in poultry from the perspectives of microRNA.Poult Sci2020
31299122Intrinsically disordered domains: Sequence â¿¿ disorder â¿¿ function relationships.Protein Sci2019
32021971Progress in understanding the relationship between long noncoding RNA and endometriosis.Eur J Obstet Gynecol Reprod Biol X2019
29402802Differential Expression of MiR-106b-5p and MiR-200c-3p in Newly Diagnosed Versus Chronic Primary Immune Thrombocytopenia Patients Based on Systematic Analysis.Cell Physiol Biochem2018
30107728Node-Weighted Amino Acid Network Strategy for Characterization and Identification of Protein Functional Residues.J Chem Inf Model2018
30027851Recent Advances on the Network Models in Target-based Drug Discovery.Curr Top Med Chem2018
29674125Deciphering the role of dimer interface in intrinsic dynamics and allosteric pathways underlying the functional transformation of DNMT3A.Biochim Biophys Acta Gen Subj2018
28507466High level of miR-196b at newly diagnosed pediatric acute myeloid leukemia predicts a poor outcome.EXCLI J2017
26722365Comparison of Prognostic MicroRNA Biomarkers in Blood and Tissues for Gastric Cancer.J Cancer2016
26412789Amino acid network for prediction of catalytic residues in enzymes: a comparison survey.Curr Protein Pept Sci2016
28044128Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach.Biomed Res Int2016
27625573Biological Networks for Cancer Candidate Biomarkers Discovery.Cancer Inform2016
25645944Identification of the genes regulated by Wnt-4, a critical signal for commitment of the ovary.Exp Cell Res2015
26317787MicroRNA biomarker identification for pediatric acute myeloid leukemia based on a novel bioinformatics model.Oncotarget2015
24115148SVR_CAF: an integrated score function for detecting native protein structures among decoys.Proteins2014
24982912Identification of microRNAs as potential biomarker for gastric cancer by system biological analysis.Biomed Res Int2014
25059328Amino acid network for the discrimination of native protein structures from decoys.Curr Protein Pept Sci2014
24809055Identification of microRNA as sepsis biomarker based on miRNAs regulatory network analysis.Biomed Res Int2014
24618011Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer.J Transl Med2014
24623120The construction of an amino acid network for understanding protein structure and function.Amino Acids2014
24703984Amino acid contact energy networks impact protein structure and evolution.J Theor Biol2014
24672322Tumor necrosis factor-α as a diagnostic marker for neonatal sepsis: a meta-analysis.ScientificWorldJournal2014
24371124Wnt4, a pleiotropic signal for controlling cell polarity, basement membrane integrity, and antimüllerian hormone expression during oocyte maturation in the female follicle.FASEB J2014
24486230Residue interaction network analysis of Dronpa and a DNA clamp.J Theor Biol2014
23586054Translational biomedical informatics in the cloud: present and future.Biomed Res Int2013
24555436Identification of novel microRNA regulatory pathways associated with heterogeneous prostate cancer.BMC Syst Biol2013
24565222Identifying novel glioma associated pathways based on systems biology level meta-analysis.BMC Syst Biol2013
23841900Clear cell renal cell carcinoma associated microRNA expression signatures identified by an integrated bioinformatics analysis.J Transl Med2013
23984377Diagnosis value of the serum amyloid A test in neonatal sepsis: a meta-analysis.Biomed Res Int2013
23957008Translational bioinformatics for diagnostic and prognostic prediction of prostate cancer in the next-generation sequencing era.Biomed Res Int2013
23441894The topology and dynamics of protein complexes: insights from intra- molecular network theory.Curr Protein Pept Sci2013
20714301Effects of time point measurement on the reconstruction of gene regulatory networks.Molecules2010
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Collaborators

Bairong Shen
Institute for Systems Genetics, Western China Hospital, Sichuan University
Co-authored papers 26
Zhandong Sun
Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences
Co-authored papers 6
Yuxin Lin
The First Affiliated Hospital of Soochow University
Co-authored papers 5
Yujie Zhu
Affiliated Drum Tower Hospital, Medical School of Nanjing University
Co-authored papers 2
Hualiang Jiang
Shanghai Institute of Materia Medica, Chinese Academy of Sciences
Co-authored papers 1
Xiaoqian Jiang
Carnegie Mellon University, The University of Texas Health Science Center at Houston, University of California San Diego
Co-authored papers 1
Alan Keith Dunker
Center for Computational Biology, Indiana University School of Medicine
Co-authored papers 1
Zhi Jiang
The First Affiliated Hospital of Soochow University, Soochow University
Co-authored papers 1
Jingjing Shi
Affiliated Hospital of Jiangnan University
Co-authored papers 1
Release 1.2