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Author Details

Hedi Peterson
Institute of Computer Science, University of Tartu
2000
45
20
PMIDPaper TitleJournal TitlePublished Year
36797492Prediction of prime editing insertion efficiencies using sequence features and DNA repair determinants.Nat Biotechnol2023
37721944eQTL Catalogue 2023: New datasets, X chromosome QTLs, and improved detection and visualisation of transcript-level QTLs.PLoS Genet2023
37425722The interplay of DNA repair context with target sequence predictably biasses Cas9-generated mutations.bioRxiv2023
37144459g:Profiler-interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update).Nucleic Acids Res2023
37034709Untargeted metabolomics profiling in pediatric patients and adult populations indicates a connection between lipid imbalance and epilepsy.medRxiv2023
37066341Systematic visualisation of molecular QTLs reveals variant mechanisms at GWAS loci.bioRxiv2023
36749097Autoantibody screening of plasma and peritoneal fluid of patients with endometriosis.Hum Reprod2023
35287021The 1<sup>st</sup> year of the COVID-19 epidemic in Estonia: a population-based nationwide sequential/consecutive cross-sectional study.Public Health2022
35397197Epigenetic quantification of immunosenescent CD8<sup>+</sup> TEMRA cells in human blood.Aging Cell2022
36035246Omics-informed CNV calls reduce false-positive rates and improve power for CNV-trait associations.HGG Adv2022
33868260Post-Aire Medullary Thymic Epithelial Cells and Hassall's Corpuscles as Inducers of Tonic Pro-Inflammatory Microenvironment.Front Immunol2021
32702016A framework to assess the quality and impact of bioinformatics training across ELIXIR.PLoS Comput Biol2020
33239683Longitudinal proteomic profiling reveals increased early inflammation and sustained apoptosis proteins in severe COVID-19.Sci Rep2020
32880574Co-expression analysis reveals interpretable gene modules controlled by <i>trans</i>-acting genetic variants.Elife2020
32591764Publisher Correction: Building an international consortium for tracking coronavirus health status.Nat Med2020
31066453g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update).Nucleic Acids Res2019
31723213Multiplex analysis of 40 cytokines do not allow separation between endometriosis patients and controls.Sci Rep2019
31413325HENA, heterogeneous network-based data set for Alzheimer's disease.Sci Data2019
31405382The bio.tools registry of software tools and data resources for the life sciences.Genome Biol2019
30428831funcExplorer: a tool for fast data-driven functional characterisation of high-throughput expression data.BMC Genomics2018
27015953Fingerprinting of neurotoxic compounds using a mouse embryonic stem cell dual luminescence reporter assay.Arch Toxicol2017
29333231Using bio.tools to generate and annotate workbench tool descriptions.F1000Res2017
28922377C-reactive protein upregulates the whole blood expression of CD59 - an integrative analysis.PLoS Comput Biol2017
28790368Signs of innate immune activation and premature immunosenescence in psoriasis patients.Sci Rep2017
28861084Autoantibody Repertoire in APECED Patients Targets Two Distinct Subgroups of Proteins.Front Immunol2017
27098042g:Profiler-a web server for functional interpretation of gene lists (2016 update).Nucleic Acids Res2016
26538599Tools and data services registry: a community effort to document bioinformatics resources.Nucleic Acids Res2016
27426947AIRE-Deficient Patients Harbor Unique High-Affinity Disease-Ameliorating Autoantibodies.Cell2016
27129694"Watching the Detectives" report of the general assembly of the EU project DETECTIVE Brussels, 24-25 November 2015.Arch Toxicol2016
27090967Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer.Reprod Biomed Online2016
25890728Human three-dimensional engineered neural tissue reveals cellular and molecular events following cytomegalovirus infection.Biomaterials2015
23179753Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach.Arch Toxicol2013
24194720Qualitative modeling identifies IL-11 as a novel regulator in maintaining self-renewal in human pluripotent stem cells.Front Physiol2013
23899445The relationship between brain tumor cell invasion of engineered neural tissues and in vivo features of glioblastoma.Biomaterials2013
21646346MicroRNA expression profiles of human blood monocyte-derived dendritic cells and macrophages reveal miR-511 as putative positive regulator of Toll-like receptor 4.J Biol Chem2011
20678241Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development.Genome Biol2010
21087476Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells.BMC Genomics2010
20505756A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells.PLoS One2010
19483095VisHiC--hierarchical functional enrichment analysis of microarray data.Nucleic Acids Res2009
19961599Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods.Genome Biol2009
19348627Ranking genes by their co-expression to subsets of pathway members.Ann N Y Acad Sci2009
18056068KEGGanim: pathway animations for high-throughput data.Bioinformatics2008
18460544GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.Nucleic Acids Res2008
17478515g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.Nucleic Acids Res2007
10722197The forensic analysis of soil organic by FTIR.Forensic Sci Int2000
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Collaborators

Jaak Vilo
Institute of Computer Science, University of Tartu
Co-authored papers 21
J??ri Reimand
Ontario Institute for Cancer Research
Co-authored papers 8
Agapios Sachinidis
Institute of Neurophysiology, University of Cologne
Co-authored papers 3
Herv?? M??nager
Institut Francais de Bioinformatique
Co-authored papers 3
Jon Ison
Institut Francais de Bioinformatique, CNRS
Co-authored papers 3
Zolt??n Kutalik
University of Lausanne
Co-authored papers 2
Mina Ryten
UCL Great Ormond Street Institute of Child Health, University College London
Co-authored papers 2
Rafael C Jimenez
European Bioinformatics Institute
Co-authored papers 2
Masahiro Kanai
Co-authored papers 2
Veit Schw??mmle
University of Southern Denmark
Co-authored papers 2
Lili Milani
Co-authored papers 2
Ioannis Xenarios
University of Lausanne
Co-authored papers 2
J??rgen Hescheler
Institute of Neurophysiology, University of Cologne
Co-authored papers 2
Niall Beard
The University of Manchester
Co-authored papers 2
Hans Ienasescu
Technical University of Denmark
Co-authored papers 2
S??ren Brunak
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 2
Mat???? Kala??
University of Bergen
Co-authored papers 2
Steffen M??ller
Rostock University Medical Center
Co-authored papers 1
William E Allen
Harvard University
Co-authored papers 1
Ran D Balicer
Clalit Health Services, Ben Gurion University
Co-authored papers 1
Rob Hooft van Huijsduijnen
Vrije Universiteit Amsterdam (VU)
Co-authored papers 1
Ximena Bonilla
ETH Zurich, University Hospital Zurich
Co-authored papers 1
Gregory Landua
Co-authored papers 1
Hilary K Finucane
Co-authored papers 1
Giuseppe Profiti
University of Bologna
Co-authored papers 1
Jacob C Ulirsch
Co-authored papers 1
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 1
Jacques van Helden
Co-authored papers 1
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 1
David A Drew
Massachusetts General Hospital and Harvard Medical School
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Release 1.2