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Author Details

Tim R Mercer
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
2007
74
44
PMIDPaper TitleJournal TitlePublished Year
36596869Long non-coding RNAs: definitions, functions, challenges and recommendations.Nat Rev Mol Cell Biol2023
36609150The splicing effect of variants at branchpoint elements in cancer genes.Genet Med2023
35022065Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome.Genome Biol2022
36307482Library adaptors with integrated reference controls improve the accuracy and reliability of nanopore sequencing.Nat Commun2022
35320727ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3.Cell Rep2022
35153075The potential of long noncoding RNA therapies.Trends Pharmacol Sci2022
35241127Towards accurate and reliable resolution of structural variants for clinical diagnosis.Genome Biol2022
34872104A clinical laboratory-developed LSC17 stemness score assay for rapid risk assessment of patients with acute myeloid leukemia.Blood Adv2022
33971925Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome.Genome Biol2021
35475002Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA.Cell Rep Methods2021
33514761Chimeric synthetic reference standards enable cross-validation of positive and negative controls in SARS-CoV-2 molecular tests.Sci Rep2021
33846644Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology.Nat Biotechnol2021
33863344Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.Genome Biol2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34749795The Sequencing Quality Control 2 study: establishing community standards for sequencing in precision medicine.Genome Biol2021
33948037Testing at scale during the COVID-19 pandemic.Nat Rev Genet2021
32269228Author Correction: Diagnosis of fusion genes using targeted RNA sequencing.Nat Commun2020
32059783Lymphoma Driver Mutations in the Pathogenic Evolution of an Iconic Human Autoantibody.Cell2020
32681090A universal and independent synthetic DNA ladder for the quantitative measurement of genomic features.Nat Commun2020
30902988Chiral DNA sequences as commutable controls for clinical genomics.Nat Commun2019
32914017Crizotinib and Surgery for Long-Term Disease Control in Children and Adolescents With ALK-Positive Inflammatory Myofibroblastic Tumors.JCO Precis Oncol2019
31217595Use of synthetic DNA spike-in controls (sequins) for human genome sequencing.Nat Protoc2019
30918253Diagnosis of fusion genes using targeted RNA sequencing.Nat Commun2019
31031799Targeted, High-Resolution RNA Sequencing of Non-coding Genomic Regions Associated With Neuropsychiatric Functions.Front Genet2019
29092009Machine learning annotation of human branchpoints.Bioinformatics2018
30082706Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis.Nat Commun2018
29396323Universal Alternative Splicing of Noncoding Exons.Cell Syst2018
28634201Phosphoproteomic Profiling Reveals ALK and MET as Novel Actionable Targets across Synovial Sarcoma Subtypes.Cancer Res2017
28130232ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing.Bioinformatics2017
29284497Intergenic disease-associated regions are abundant in novel transcripts.Genome Biol2017
28626224Reference standards for next-generation sequencing.Nat Rev Genet2017
28777932Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage.Am J Hum Genet2017
28535931The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome.Trends Genet2017
27197243Improved definition of the mouse transcriptome via targeted RNA sequencing.Genome Res2016
27502218Spliced synthetic genes as internal controls in RNA sequencing experiments.Nat Methods2016
27502217Representing genetic variation with synthetic DNA standards.Nat Methods2016
25561518Genome-wide discovery of human splicing branchpoints.Genome Res2015
25693563Integrative analysis of 111 reference human epigenomes.Nature2015
25751143Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.Nat Methods2015
24705597Targeted sequencing for gene discovery and quantification using RNA CaptureSeq.Nat Protoc2014
25242146Extracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells.Mol Cell2014
23324121Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch.BMC Genomics2013
24118942Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach.BMC Genomics2013
24183674Mapping of mitochondrial RNA-protein interactions by digital RNase footprinting.Cell Rep2013
23817049Understanding the regulatory and transcriptional complexity of the genome through structure.Genome Res2013
23793028DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.Nat Genet2013
23463315Structure and function of long noncoding RNAs in epigenetic regulation.Nat Struct Mol Biol2013
22673213Transcriptional effects of a lupus-associated polymorphism in the 5' untranslated region (UTR) of human complement receptor 2 (CR2/CD21).Mol Immunol2012
22777840The human mitochondrial transcriptome and the RNA-binding proteins that regulate its expression.Wiley Interdiscip Rev RNA2012
21075793Expression of distinct RNAs from 3' untranslated regions.Nucleic Acids Res2011
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Collaborators

John S Mattick
Australia UNSW RNA Institute
Co-authored papers 43
Marcel E Dinger
The University of Sydney
Co-authored papers 30
Weida Tong
National Center for Toxicological Research
Co-authored papers 6
Joshua Xu
Co-authored papers 6
Sean M Grimmond
The University of Melbourne
Co-authored papers 5
Ken C Pang
Co-authored papers 5
Wendell D Jones
Department of Bioinformatics and Clinical Systems
Co-authored papers 4
Christopher E Mason
Feil Family Brain and Mind Research Institute.
Co-authored papers 4
Rebecca Kusko
Immuneering Corporation
Co-authored papers 4
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 3
Donald J Johann
Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences
Co-authored papers 3
Zhichao Liu
Co-authored papers 3
Shane Neph
Altius Institute for Biomedical Sciences
Co-authored papers 3
James C Willey
Co-authored papers 3
David M Thomas
Garvan Institute of Medical Research
Co-authored papers 3
Quan-Zhen Li
Co-authored papers 3
Andreas Scherer
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 3
Xiaohui Fan
College of Life Sciences, Zhejiang University
Co-authored papers 2
Melissa L Smith
University of Louisville
Co-authored papers 2
Richard Sandstrom
Altius Institute for Biomedical Sciences
Co-authored papers 2
Wenzhong Xiao
Stanford University
Co-authored papers 2
Pierre R Bushel
Co-authored papers 2
Mark L Crowe
Co-authored papers 2
Robert Sebra
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Hong Fang
National Center for Toxicological Research (NCTR)
Co-authored papers 2
Wenjun Bao
SAS Institute Inc Cary
Co-authored papers 2
Juliet D French
QIMR Berghofer Medical Research Institute
Co-authored papers 2
Stacey L Edwards
QIMR Berghofer Medical Research Institute
Co-authored papers 2
Tieliu Shi
Co-authored papers 2
Zhiguang Li
Co-authored papers 2
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