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Author Details

Scott A Handley
Washington University School of Medicine
2000
69
33
PMIDPaper TitleJournal TitlePublished Year
36634180ApoE isoform- and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy.Science2023
37665209Host interactions of novel <i>Crassvirales</i> species belonging to multiple families infecting bacterial host, <i>Bacteroides cellulosilyticus</i> WH2.Microb Genom2023
36993345The highly conserved stem-loop II motif is dispensable for SARS-CoV-2.bioRxiv2023
37214888Tracking the prevalence and emergence of SARS CoV2 variants of concern using a regional genomic surveillance program.medRxiv2023
36945541Host interactions of novel <i>Crassvirales</i> species belonging to multiple families infecting bacterial host, <i>Bacteroides cellulosilyticus</i> WH2.bioRxiv2023
37223945The Highly Conserved Stem-Loop II Motif Is Dispensable for SARS-CoV-2.J Virol2023
36789285The history and organization of the Workshop on Population and Speciation Genomics.Evolution (N Y)2023
35297953Neutralizing antibodies protect mice against Venezuelan equine encephalitis virus aerosol challenge.J Exp Med2022
35547847The highly conserved stem-loop II motif is important for the lifecycle of astroviruses but dispensable for SARS-CoV-2.bioRxiv2022
35394816Human enteric viruses autonomously shape inflammatory bowel disease phenotype through divergent innate immunomodulation.Sci Immunol2022
35780162Resilience of S309 and AZD7442 monoclonal antibody treatments against infection by SARS-CoV-2 Omicron lineage strains.Nat Commun2022
36520686Ten simple rules and a template for creating workflows-as-applications.PLoS Comput Biol2022
35130125Single-cell genomics for resolution of conserved bacterial genes and mobile genetic elements of the human intestinal microbiota using flow cytometry.Gut Microbes2022
34932985Enteric virome negatively affects seroconversion following oral rotavirus vaccination in a longitudinally sampled cohort of Ghanaian infants.Cell Host Microbe2022
33278339Intercellular Mitochondria Transfer to Macrophages Regulates White Adipose Tissue Homeostasis and Is Impaired in Obesity.Cell Metab2021
33907753A potently neutralizing anti-SARS-CoV-2 antibody inhibits variants of concern by binding a highly conserved epitope.bioRxiv2021
33760921The dark side of the gut: Virome-host interactions in intestinal homeostasis and disease.J Exp Med2021
33831142Broadly neutralizing monoclonal antibodies protect against multiple tick-borne flaviviruses.J Exp Med2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34610295Implications of a highly divergent dengue virus strain for cross-neutralization, protection, and vaccine immunity.Cell Host Microbe2021
34812429Reduced antibody activity against SARS-CoV-2 B.1.617.2 delta virus in serum of mRNA-vaccinated individuals receiving tumor necrosis factor-α inhibitors.Med2021
34604114Antigen Presenting Cells Link the Female Genital Tract Microbiome to Mucosal Inflammation, With Hormonal Contraception as an Additional Modulator of Inflammatory Signatures.Front Cell Infect Microbiol2021
34481543A potently neutralizing SARS-CoV-2 antibody inhibits variants of concern by utilizing unique binding residues in a highly conserved epitope.Immunity2021
34351224Divergent Enteroviruses from Macaques with Chronic Diarrhea.Microbiol Resour Announc2021
34245762Multi-Omics Analyses Show Disease, Diet, and Transcriptome Interactions With the Virome.Gastroenterology2021
34153975In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains.Nature2021
34035496Author Correction: Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes.Nat Microbiol2021
33372156UFMylation inhibits the proinflammatory capacity of interferon-γ-activated macrophages.Proc Natl Acad Sci U S A2021
32668198The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid-Type I IFN Signaling Axis.Cell2020
32075743An Evolutionary Insertion in the Mxra8 Receptor-Binding Site Confers Resistance to Alphavirus Infection and Pathogenesis.Cell Host Microbe2020
32658671Relative macrofaunal biomass reduced under an enriched salmon farm, Pelorus Sound, Aotearoa-New Zealand.Mar Pollut Bull2020
32574158Growth velocity in children with Environmental Enteric Dysfunction is associated with specific bacterial and viral taxa of the gastrointestinal tract in Malawian children.PLoS Negl Trop Dis2020
32931909Sex effects in the association between airway microbiome and asthma.Ann Allergy Asthma Immunol2020
30468938Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea.Virology2019
31346084Autophagy genes in myeloid cells counteract IFNγ-induced TNF-mediated cell death and fatal TNF-induced shock.Proc Natl Acad Sci U S A2019
31252683Phages and Human Health: More Than Idle Hitchhikers.Viruses2019
31130511A Secreted Viral Nonstructural Protein Determines Intestinal Norovirus Pathogenesis.Cell Host Microbe2019
31100262Drowning in Viruses.Cell2019
30670618Going Viral: a Novel Role for Bacteriophage in Colorectal Cancer.mBio2019
29298888Rapid Cloning of Novel Rhesus Adenoviral Vaccine Vectors.J Virol2018
30092197Effect of Antibiotic-Mediated Microbiome Modulation on Rotavirus Vaccine Immunogenicity: A Human, Randomized-Control Proof-of-Concept Trial.Cell Host Microbe2018
29851662Alterations in the oral microbiome in HIV-infected participants after antiretroviral therapy administration are influenced by immune status.AIDS2018
29496999LysMD3 is a type II membrane protein without an <b><i>in vivo</i></b> role in the response to a range of pathogens.J Biol Chem2018
29590614Oral Antibiotic Treatment of Mice Exacerbates the Disease Severity of Multiple Flavivirus Infections.Cell Rep2018
29650672Tropism for tuft cells determines immune promotion of norovirus pathogenesis.Science2018
28087240Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women.Immunity2017
26764599Autophagy Genes Enhance Murine Gammaherpesvirus 68 Reactivation from Latency by Preventing Virus-Induced Systemic Inflammation.Cell Host Microbe2016
26962943SIV Infection-Mediated Changes in Gastrointestinal Bacterial Microbiome and Virome Are Associated with Immunodeficiency and Prevented by Vaccination.Cell Host Microbe2016
26962942Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome.Cell Host Microbe2016
27037032The virome: a missing component of biological interaction networks in health and disease.Genome Med2016
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Collaborators

Washington University School of Medicine
Co-authored papers 9
Yale School of Medicine
Co-authored papers 6
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Co-authored papers 6
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Vanderbilt University Medical Center
Co-authored papers 5
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Co-authored papers 4
Ragon Institute of MGH
Co-authored papers 4
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University of Texas Medical Branch
Co-authored papers 3
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Co-authored papers 3
Vanderbilt University Medical Center
Co-authored papers 3
David Geffen School of Medicine, University of California Los Angeles
Co-authored papers 2
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Co-authored papers 2
Washington University School of Medicine at St. Louis
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
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University of Minnesota
Co-authored papers 2
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Massachusetts Institute of Technology
Co-authored papers 1
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Monash University
Co-authored papers 1
Pathology Advanced Translational Research Unit, Emory University School of Medicine
Co-authored papers 1
University of Pennsylvania
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Paris Center for Microbiome Medicine
Co-authored papers 1