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Author Details

Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
1986
429
90
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36798425Analysis of electronic health records from three distinct and large populations reveals high prevalence and biases in the co-administration of drugs known to interact.medRxiv2023
38015956Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical-protein relations.Database (Oxford)2023
37903760PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks.NPJ Syst Biol Appl2023
36798425Analysis of electronic health records from three distinct and large populations reveals high prevalence and biases in the co-administration of drugs known to interact.medRxiv2023
38015956Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical-protein relations.Database (Oxford)2023
37903760PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks.NPJ Syst Biol Appl2023
35164900Patient-specific Boolean models of signalling networks guide personalised treatments.Elife2022
35463947Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth.Front Mol Biosci2022
35512388Detection of oncogenic and clinically actionable mutations in cancer genomes critically depends on variant calling tools.Bioinformatics2022
35487732Design and methodological characteristics of studies using observational routinely collected health data for investigating the link between cancer and neurodegenerative diseases: protocol for a meta-research study.BMJ Open2022
36124809ECCB2022: the 21st European Conference on Computational Biology.Bioinformatics2022
35164900Patient-specific Boolean models of signalling networks guide personalised treatments.Elife2022
34875418ExTRI: Extraction of transcription regulation interactions from literature.Biochim Biophys Acta Gene Regul Mech2022
35157020Mortality in Persons With Autism Spectrum Disorder or Attention-Deficit/Hyperactivity Disorder: A Systematic Review and Meta-analysis.JAMA Pediatr2022
35512388Detection of oncogenic and clinically actionable mutations in cancer genomes critically depends on variant calling tools.Bioinformatics2022
35463947Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth.Front Mol Biosci2022
35487732Design and methodological characteristics of studies using observational routinely collected health data for investigating the link between cancer and neurodegenerative diseases: protocol for a meta-research study.BMJ Open2022
36124809ECCB2022: the 21st European Conference on Computational Biology.Bioinformatics2022
35157020Mortality in Persons With Autism Spectrum Disorder or Attention-Deficit/Hyperactivity Disorder: A Systematic Review and Meta-analysis.JAMA Pediatr2022
34875418ExTRI: Extraction of transcription regulation interactions from literature.Biochim Biophys Acta Gene Regul Mech2022
33446891Simulating SARS-CoV-2 epidemics by region-specific variables and modeling contact tracing app containment.NPJ Digit Med2021
33800393The eTRANSAFE Project on Translational Safety Assessment through Integrative Knowledge Management: Achievements and Perspectives.Pharmaceuticals (Basel)2021
33533192Artificial intelligence in cancer research: learning at different levels of data granularity.Mol Oncol2021
33953289Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas.Leukemia2021
33889829The multilayer community structure of medulloblastoma.iScience2021
33731935Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.Nature2021
33456724Unraveling the molecular basis of host cell receptor usage in SARS-CoV-2 and other human pathogenic β-CoVs.Comput Struct Biotechnol J2021
33452270A catalogue of 863 Rett-syndrome-causing MECP2 mutations and lessons learned from data integration.Sci Data2021
34203763Transcriptomic and Genetic Associations between Alzheimer's Disease, Parkinson's Disease, and Cancer.Cancers (Basel)2021
33560998Artificial Intelligence-Aided Precision Medicine for COVID-19: Strategic Areas of Research and Development.J Med Internet Res2021
33510275SARS-CoV-2 infection elicits a rapid neutralizing antibody response that correlates with disease severity.Sci Rep2021
33509367How to Design AI-Driven Clinical Trials in Nuclear Medicine.Semin Nucl Med2021
33446891Simulating SARS-CoV-2 epidemics by region-specific variables and modeling contact tracing app containment.NPJ Digit Med2021
33825619Protection against reinfection with D614- or G614-SARS-CoV-2 isolates in golden Syrian hamster.Emerg Microbes Infect2021
34735818Perspectives on emerging technologies, personalised medicine, and clinical research for cancer control in Latin America and the Caribbean.Lancet Oncol2021
34458728Computational analysis of sense-antisense chimeric transcripts reveals their potential regulatory features and the landscape of expression in human cells.NAR Genom Bioinform2021
34848723COVID-19 Flow-Maps an open geographic information system on COVID-19 and human mobility for Spain.Sci Data2021
34664389COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34493659MAX mutant small-cell lung cancers exhibit impaired activities of MGA-dependent noncanonical polycomb repressive complex.Proc Natl Acad Sci U S A2021
34648034STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells.Nucleic Acids Res2021
34595772Assessing the accuracy of contact and distance predictions in CASP14.Proteins2021
34939300COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
35072136GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell Genom2021
33825619Protection against reinfection with D614- or G614-SARS-CoV-2 isolates in golden Syrian hamster.Emerg Microbes Infect2021
33510275SARS-CoV-2 infection elicits a rapid neutralizing antibody response that correlates with disease severity.Sci Rep2021
33731935Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.Nature2021
33509367How to Design AI-Driven Clinical Trials in Nuclear Medicine.Semin Nucl Med2021
33560998Artificial Intelligence-Aided Precision Medicine for COVID-19: Strategic Areas of Research and Development.J Med Internet Res2021
33533192Artificial intelligence in cancer research: learning at different levels of data granularity.Mol Oncol2021
33889829The multilayer community structure of medulloblastoma.iScience2021
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Miguel Vazquez
Norwegian University of Science and Technology
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Christian Blaschke
University of Otago
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Children's Hospital of Philadelphia
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Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 11
Christine Orengo
University College London, Institute of Structural and Molecular Biology
Co-authored papers 11
Salvador Capella-Gutierrez
Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
Co-authored papers 11
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 11
Francisco X Real
Spanish National Cancer Research Centre-CNIO
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Joaqu??n Dopazo
Andalusian Public Foundation Progress and Health-FPS
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Paul Flicek
European Bioinformatics Institute
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Xose S Puente
University of Oviedo
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Marta Gut
Universitat de Barcelona (UB)
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Damien P Devos
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Release 1.2