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Author Details

Oliver Stegle
Wellcome Sanger Institute
2008
140
66
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36865282OME-Zarr: a cloud-optimized bioimaging file format with international community support.bioRxiv2023
37596262A genome-wide association study of blood cell morphology identifies cellular proteins implicated in disease aetiology.Nat Commun2023
37710019Principles and challenges of modeling temporal and spatial omics data.Nat Methods2023
37390336Resolving therapy resistance mechanisms in multiple myeloma by multiomics subclone analysis.Blood2023
36697831Author Correction: Genomic basis for RNA alterations in cancer.Nature2023
37308670Mapping interindividual dynamics of innate immune response at single-cell resolution.Nat Genet2023
36865282OME-Zarr: a cloud-optimized bioimaging file format with international community support.bioRxiv2023
36543915A spatially resolved atlas of the human lung characterizes a gland-associated immune niche.Nat Genet2023
36991123Spatial multiomics map of trophoblast development in early pregnancy.Nature2023
37039825FISHFactor: a probabilistic factor model for spatial transcriptomics data with subcellular resolution.Bioinformatics2023
37596262A genome-wide association study of blood cell morphology identifies cellular proteins implicated in disease aetiology.Nat Commun2023
37710019Principles and challenges of modeling temporal and spatial omics data.Nat Methods2023
37390336Resolving therapy resistance mechanisms in multiple myeloma by multiomics subclone analysis.Blood2023
36991123Spatial multiomics map of trophoblast development in early pregnancy.Nature2023
37308670Mapping interindividual dynamics of innate immune response at single-cell resolution.Nat Genet2023
37039825FISHFactor: a probabilistic factor model for spatial transcriptomics data with subcellular resolution.Bioinformatics2023
36697831Author Correction: Genomic basis for RNA alterations in cancer.Nature2023
36543915A spatially resolved atlas of the human lung characterizes a gland-associated immune niche.Nat Genet2023
35105358MUON: multimodal omics analysis framework.Genome Biol2022
35972065CellRegMap: a statistical framework for mapping context-specific regulatory variants using scRNA-seq.Mol Syst Biol2022
35365635Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses.Nat Commun2022
36260190Framework and baseline examination of the German National Cohort (NAKO).Eur J Epidemiol2022
34991671scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation.Genome Biol2022
35288711Genetic associations at regulatory phenotypes improve fine-mapping of causal variants for 12 immune-mediated diseases.Nat Genet2022
35027765Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO.Nat Methods2022
35027729Cell2location maps fine-grained cell types in spatial transcriptomics.Nat Biotechnol2022
35105358MUON: multimodal omics analysis framework.Genome Biol2022
35176234Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories.Dev Cell2022
35365635Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses.Nat Commun2022
35972065CellRegMap: a statistical framework for mapping context-specific regulatory variants using scRNA-seq.Mol Syst Biol2022
36260190Framework and baseline examination of the German National Cohort (NAKO).Eur J Epidemiol2022
35288711Genetic associations at regulatory phenotypes improve fine-mapping of causal variants for 12 immune-mediated diseases.Nat Genet2022
35176234Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories.Dev Cell2022
35027765Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO.Nat Methods2022
35027729Cell2location maps fine-grained cell types in spatial transcriptomics.Nat Biotechnol2022
34991671scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation.Genome Biol2022
34373457IceR improves proteome coverage and data completeness in global and single-cell proteomics.Nat Commun2021
33910018Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome.Cell Rep2021
33632895Haplotype-resolved diverse human genomes and integrated analysis of structural variation.Science2021
33731935Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.Nature2021
33941931Computational principles and challenges in single-cell data integration.Nat Biotechnol2021
33664506Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation.Nat Genet2021
34311762Dissecting indirect genetic effects from peers in laboratory mice.Genome Biol2021
34183662Author Correction: Cell segmentation-free inference of cell types from in situ transcriptomics data.Nat Commun2021
34845188Subclone-specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single-cell transcriptomics.Nat Commun2021
34426706Mitochondrial DNA variants modulate N-formylmethionine, proteostasis and risk of late-onset human diseases.Nat Med2021
34373457IceR improves proteome coverage and data completeness in global and single-cell proteomics.Nat Commun2021
34475573Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression.Nat Genet2021
33910018Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome.Cell Rep2021
33731935Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.Nature2021
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Collaborators

John C Marioni
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 16
Wolf Reik
The Babraham Institute
Co-authored papers 14
Sarah A Teichmann
Wellcome Sanger Institute
Co-authored papers 10
Richard Durbin
University of Cambridge
Co-authored papers 9
Willem H Ouwehand
University of Cambridge
Co-authored papers 9
Gunnar R??tsch
ETH Zurich
Co-authored papers 8
Ewan Birney
European Bioinformatics Institute
Co-authored papers 8
Andr?? Kahles
ETH Zurich
Co-authored papers 8
Nicole Soranzo
Wellcome Sanger Institute
Co-authored papers 8
Fabian J Theis
Technical University of Munich
Co-authored papers 7
Klaudia Walter
Wellcome Sanger Institute
Co-authored papers 7
Davis J McCarthy
Co-authored papers 6
Kate Downes
Co-authored papers 6
Ricard Argelaguet
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Alice L Mann
Wellcome Sanger Institute
Co-authored papers 5
Paul Flicek
European Bioinformatics Institute
Co-authored papers 5
Alvis Brazma
European Bioinformatics Institute
Co-authored papers 5
Helena Kilpinen
Co-authored papers 5
Kousik Kundu
The Wellcome Sanger Institute
Co-authored papers 5
Laura Clarke
Co-authored papers 5
Philip Rosenstiel
Co-authored papers 5
Jan O Korbel
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Mattia Frontini
Co-authored papers 5
Adam S Butterworth
British Heart Foundation Cardiovascular Epidemiology Unit, University of Cambridge
Co-authored papers 5
Emmanouil T Dermitzakis
University of Geneva
Co-authored papers 4
Steven E Brenner
University of California berkeley
Co-authored papers 4
Stephen Watt
Wellcome Sanger Institute
Co-authored papers 4
Bruce M Psaty
Co-authored papers 4
John Danesh
Co-authored papers 4
Lude Franke
Co-authored papers 4
Release 1.2