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Author Details

Morgan N Price
Lawrence Berkeley National Laboratory
2004
67
34
PMIDPaper TitleJournal TitlePublished Year
36471119Erroneous predictions of auxotrophies by CarveMe.Nat Ecol Evol2023
37888487Evaluating E.â¿¿coli genome-scale metabolic model accuracy with high-throughput mutant fitness data.Mol Syst Biol2023
37065130Large-scale genetic characterization of the model sulfate-reducing bacterium, <i>Desulfovibrio vulgaris</i> Hildenborough.Front Microbiol2023
36374048Interactive Analysis of Functional Residues in Protein Families.mSystems2022
35417463Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics.PLoS Genet2022
33534785Four families of folate-independent methionine synthases.PLoS Genet2021
33657378Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments.Cell Rep2021
33649553Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins.ISME J2021
32372050Selective carbon sources influence the end products of microbial nitrate respiration.ISME J2020
32576650GapMind: Automated Annotation of Amino Acid Biosynthesis.mSystems2020
30659179Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria.Nat Commun2019
31253673Nitrate-Utilizing Microorganisms Resistant to Multiple Metals from the Heavily Contaminated Oak Ridge Reservation.Appl Environ Microbiol2019
30944879Curated BLAST for Genomes.mSystems2019
30943208Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.PLoS Genet2019
30746495Oxidative Pathways of Deoxyribose and Deoxyribonate Catabolism.mSystems2019
30523276The selective pressures on the microbial community in a metal-contaminated aquifer.ISME J2019
30536693A new family of transcriptional regulators of tungstoenzymes and molybdate/tungstate transport.Environ Microbiol2019
29324779Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.PLoS Genet2018
29359196Magic Pools: Parallel Assessment of Transposon Delivery Vectors in Bacteria.mSystems2018
29769716Mutant phenotypes for thousands of bacterial genes of unknown function.Nature2018
28845458PaperBLAST: Text Mining Papers for Information about Homologs.mSystems2017
28947739A metabolic pathway for catabolizing levulinic acid in bacteria.Nat Microbiol2017
28542589Validating regulatory predictions from diverse bacteria with mutant fitness data.PLoS One2017
27289091A Theoretical Lower Bound for Selection on the Expression Levels of Proteins.Genome Biol Evol2016
27711251A Comparison of the Costs and Benefits of Bacterial Gene Expression.PLoS One2016
25405978Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate.ISME J2015
26508635The essential gene set of a photosynthetic organism.Proc Natl Acad Sci U S A2015
26452555Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses.Appl Environ Microbiol2015
26670382Weakly Deleterious Mutations and Low Rates of Recombination Limit the Impact of Natural Selection on Bacterial Genomes.mBio2015
25968644Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons.mBio2015
25968643Novel mechanism for scavenging of hypochlorite involving a periplasmic methionine-rich Peptide and methionine sulfoxide reductase.mBio2015
25977418Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site.Genome Announc2015
24118949Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria.Environ Microbiol2014
25400629The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20.Front Microbiol2014
24987095Conservation of transcription start sites within genes across a bacterial genus.mBio2014
25112473Towards an informative mutant phenotype for every bacterial gene.J Bacteriol2014
24795702Genetic basis for nitrate resistance in Desulfovibrio strains.Front Microbiol2014
24865553Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20.mBio2014
24447568The energy-conserving electron transfer system used by Desulfovibrio alaskensis strain G20 during pyruvate fermentation involves reduction of endogenously formed fumarate and cytoplasmic and membrane-bound complexes, Hdr-Flox and Rnf.Environ Microbiol2014
23082955Metabolic footprinting of mutant libraries to map metabolite utilization to genotype.ACS Chem Biol2013
23774757Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates.Mol Syst Biol2013
23591776Indirect and suboptimal control of gene expression is widespread in bacteria.Mol Syst Biol2013
23264581Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth.J Bacteriol2013
23086211Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes.J Bacteriol2013
22134646An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea.ISME J2012
21738675Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough.PLoS One2011
21992415Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium.Genome Biol2011
22125499Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions.PLoS Genet2011
21840973Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.J Bacteriol2011
21908633Generalized schemes for high-throughput manipulation of the Desulfovibrio vulgaris genome.Appl Environ Microbiol2011
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Collaborators

Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 62
Adam M Deutschbauer
Lawrence Berkeley National Laboratory
Co-authored papers 37
Judy D Wall
University of Missouri
Co-authored papers 10
Grant M Zane
University of Missouri
Co-authored papers 8
Paramvir S Dehal
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Co-authored papers 8
Eric J Alm
Massachusetts Institute of Technology 21 Ames St. Cambridge
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University of Tennessee
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Pavel S Novichkov
Lawrence Berkeley National Laboratory
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Romy Chakraborty
Lawrence Berkeley National Laboratory
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Inna Dubchak
Lawrence Berkeley National Laboratory
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Katherine Huang
Broad Institute of MIT and Harvard
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Jay D Keasling
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Lawrence Berkeley National Laboratory
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Stanford University
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Marcin P Joachimiak
E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago
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John-Marc Chandonia
Lawrence Berkeley National Laboratory
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E.O. Lawrence Berkeley National Laboratory
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David A Stahl
University of Washington
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Michelle Nguyen
School of Medicine Stanford University
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Farris L Poole
University of Georgia
Co-authored papers 2
Mary E Singer
Lawrence Berkeley National Laboratory
Co-authored papers 2
Swapnil R Chhabra
Lawrence Berkeley National Laboratory
Co-authored papers 2
Sonia A Reveco
Hospital El Carmen de Maipu
Co-authored papers 2
Michael P Thorgersen
University of Georgia
Co-authored papers 2
Aindrila Mukhopadhyay
Joint BioEnergy Institute
Co-authored papers 2
Michael W W Adams
University of Georgia
Co-authored papers 2
Christopher J Petzold
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Co-authored papers 2
Keith Keller
Co-authored papers 2
Dominique C Joyner
University of Tennessee
Co-authored papers 2
Dmitry A Rodionov
Sanford Burnham Prebys Medical Discovery Institute
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Release 1.2