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Author Details

Robert Stevens
The University of Manchester
1998
94
26
Mohammad Sadnan Al Manir (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34804501Perspectives on automated composition of workflows in the life sciences.F1000Res2021
32759099Semantic Deep Learning: Prior Knowledge and a Type of Four-Term Embedding Analogy to Acquire Treatments for Well-Known Diseases.JMIR Med Inform2020
31711540Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes.J Biomed Semantics2019
29347969MIRO: guidelines for minimum information for the reporting of an ontology.J Biomed Semantics2018
28254676Unveiling antimicrobial peptide-generating human proteases using PROTEASIX.J Proteomics2018
29650041Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature.J Biomed Semantics2018
28423846A Case Study on Sepsis Using PubMed and Deep Learning for Ontology Learning.Stud Health Technol Inform2017
28315253Prediction of Proteases Involved in Peptide Generation.Methods Mol Biol2017
26867217Ten Simple Rules for Selecting a Bio-ontology.PLoS Comput Biol2016
27751176Supporting the analysis of ontology evolution processes through the combination of static and dynamic scaling functions in OQuaRE.J Biomed Semantics2016
27331905A Survey of Bioinformatics Database and Software Usage through Mining the Literature.PLoS One2016
27259807The Proteasix Ontology.J Biomed Semantics2016
27246819The BioHub Knowledge Base: Ontology and Repository for Sustainable Biosourcing.J Biomed Semantics2016
27274817Omics databases on kidney disease: where they can be found and how to benefit from them.Clin Kidney J2016
26939790Bias in the reporting of sex and age in biomedical research on mouse models.Elife2016
24993110Prioritising lexical patterns to increase axiomatisation in biomedical ontologies. The role of localisation and modularity.Methods Inf Med2015
26131352Ambiguity and variability of database and software names in bioinformatics.J Biomed Semantics2015
25989337Quality of methods reporting in animal models of colitis.Inflamm Bowel Dis2015
25488031Approaching the axiomatic enrichment of the Gene Ontology from a lexical perspective.Artif Intell Med2015
24602198Thematic series on biomedical ontologies in JBMS: challenges and new directions.J Biomed Semantics2014
25937879Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference.J Biomed Semantics2014
25068035The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.J Biomed Semantics2014
25076044The quality of methods reporting in parasitology experiments.PLoS One2014
25161253Extracting patterns of database and software usage from the bioinformatics literature.Bioinformatics2014
22554701Measuring the level of activity in community built bio-ontologies.J Biomed Inform2013
23883183The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases.BMC Bioinformatics2013
23768135bioNerDS: exploring bioinformatics' database and software use through literature mining.BMC Bioinformatics2013
23348921Proteasix: a tool for automated and large-scale prediction of proteases involved in naturally occurring peptide generation.Proteomics2013
22687389Workshop on laboratory protocol standards for the Molecular Methods Database.N Biotechnol2013
22373396Populous: a tool for building OWL ontologies from templates.BMC Bioinformatics2012
23236474Evaluation of the Zucker diabetic fatty (ZDF) rat as a model for human disease based on urinary peptidomic profiles.PLoS One2012
23244503Analysing Syntactic Regularities and Irregularities in SNOMED-CT.J Biomed Semantics2012
22480202Structure-based classification and ontology in chemistry.J Cheminform2012
22541594Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL.J Biomed Semantics2012
22676436The language of gene ontology: a Zipf's law analysis.BMC Bioinformatics2012
22345404The KUPKB: a novel Web application to access multiomics data on kidney disease.FASEB J2012
21388573Mining semantic networks of bioinformatics e-resources from the literature.J Biomed Semantics2011
22255145Using semantic web technologies to manage complexity and change in biomedical data.Annu Int Conf IEEE Eng Med Biol Soc2011
21624162Developing a kidney and urinary pathway knowledge base.J Biomed Semantics2011
21624160Automating generation of textual class definitions from OWL to English.J Biomed Semantics2011
20484378BioCatalogue: a universal catalogue of web services for the life sciences.Nucleic Acids Res2010
20838431Adding a little reality to building ontologies for biology.PLoS One2010
21029416Further developments towards a genome-scale metabolic model of yeast.BMC Syst Biol2010
19480664The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process.Genome Biol2009
19763936A systematic strategy for the discovery of candidate genes responsible for phenotypic variation.Methods Mol Biol2009
19796398A user-centred evaluation framework for the Sealife semantic web browsers.BMC Bioinformatics2009
19796395BioGateway: a semantic systems biology tool for the life sciences.BMC Bioinformatics2009
19426458Issues in learning an ontology from text.BMC Bioinformatics2009
18358788State of the nation in data integration for bioinformatics.J Biomed Inform2008
18761740Methodology capture: discriminating between the "best" and the rest of community practice.BMC Bioinformatics2008
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Collaborators

Carole Goble
University of Manchester
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Co-authored papers 21
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Newcastle University
Co-authored papers 14
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Leiden Institute of Advanced Computer Science, Leiden University
Co-authored papers 10
Goran Nenadic
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Dawn Field
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Tanya Gray
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Alan Rector
University of Manchester
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Gilberto Fragoso
NCI Center for Bioinformatics, National Cancer Institute
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Ryan R Brinkman
University of British Columbia
Co-authored papers 2
Stephen G Oliver
University of Cambridge
Co-authored papers 2
Olivier Bodenreider
National Institutes of Health
Co-authored papers 2
Michael Ashburner
University of Cambridge
Co-authored papers 2
Robert Hoehndorf
King Abdullah University of Science and Technology
Co-authored papers 2
Matthew Pocock
Newcastle University
Co-authored papers 2
David Hancock
Co-authored papers 2
Mat???? Kala??
University of Bergen
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Release 1.2