Author details

Full Name

Joel Rozowsky

Affiliation

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37228754	exRNA-eCLIP intersection analysis reveals a map of extracellular RNA binding proteins and associated RNAs across major human biofluids and carriers.	Cell Genom	2023
37467337	More than bad luck: Cancer and aging are linked to replication-driven changes to the epigenome.	Sci Adv	2023
35047007	Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop.	Front Genet	2022
35958027	Phase 2 of extracellular RNA communication consortium charts next-generation approaches for extracellular RNA research.	iScience	2022
35474001	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2022
35317387	A Novel Tissue Atlas and Online Tool for the Interrogation of Small RNA Expression in Human Tissues and Biofluids.	Front Cell Dev Biol	2022
33902690	Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers.	Genome Med	2021
32728046	An integrative ENCODE resource for cancer genomics.	Nat Commun	2020
32737473	Supervised enhancer prediction with epigenetic pattern recognition and targeted validation.	Nat Methods	2020
32728249	Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2020
30951672	exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.	Cell	2019
31518900	Pollen-derived RNAs Are Found in the Human Circulation.	iScience	2019
30956140	exceRpt: A Comprehensive Analytic Platform for Extracellular RNA Profiling.	Cell Syst	2019
29728066	Evaluation of commercially available small RNASeq library preparation kits using low input RNA.	BMC Genomics	2018
28961734	Novel approaches for bioinformatic analysis of salivary RNA sequencing data for development.	Bioinformatics	2018
30139913	Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci.	Science	2018
30125121	Isoform-Level Interpretation of High-Throughput Proteomics Data Enabled by Deep Integration with RNA-seq.	J Proteome Res	2018
28289238	Stroke and Circulating Extracellular RNAs.	Stroke	2017
28381262	Structuring supplemental materials in support of reproducibility.	Genome Biol	2017
28303895	Total Extracellular Small RNA Profiles from Plasma, Saliva, and Urine of Healthy Subjects.	Sci Rep	2017
27255613	Corrigendum: Diverse human extracellular RNAs are widely detected in human plasma.	Nat Commun	2016
27112789	Diverse human extracellular RNAs are widely detected in human plasma.	Nat Commun	2016
27009100	The real cost of sequencing: scaling computation to keep pace with data generation.	Genome Biol	2016
27089393	A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals.	Nat Commun	2016
27005445	Temporal Dynamics of Collaborative Networks in Large Scientific Consortia.	Trends Genet	2016
27125642	Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation.	Genome Biol	2016
27123852	Discordant Expression of Circulating microRNA from Cellular and Extracellular Sources.	PLoS One	2016
27076901	Extending gene ontology in the context of extracellular RNA and vesicle communication.	J Biomed Semantics	2016
26320941	Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.	J Extracell Vesicles	2015
25884877	Loregic: a method to characterize the cooperative logic of regulatory factors.	PLoS Comput Biol	2015
25164755	Comparative analysis of the transcriptome across distant species.	Nature	2014
25349915	Decoding neuroproteomics: integrating the genome, translatome and functional anatomy.	Nat Neurosci	2014
25292436	MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework.	Genome Biol	2014
25249401	OrthoClust: an orthology-based network framework for clustering data across multiple species.	Genome Biol	2014
25157146	Comparative analysis of pseudogenes across three phyla.	Proc Natl Acad Sci U S A	2014
25164757	Comparative analysis of regulatory information and circuits across distant species.	Nature	2014
22950945	Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors.	Genome Biol	2012
22743228	VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.	Bioinformatics	2012
22955991	ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.	Genome Res	2012
22955978	Understanding transcriptional regulation by integrative analysis of transcription factor binding data.	Genome Res	2012
22955620	Landscape of transcription in human cells.	Nature	2012
22955619	Architecture of the human regulatory network derived from ENCODE data.	Nature	2012
22125477	Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data.	PLoS Comput Biol	2011
21349863	ACT: aggregation and correlation toolbox for analyses of genome tracks.	Bioinformatics	2011
21338513	Tiling array data analysis: a multiscale approach using wavelets.	BMC Bioinformatics	2011
21324173	A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets.	Genome Biol	2011
21408204	Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches.	PLoS Genet	2011
21134889	RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.	Bioinformatics	2011
21177971	Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.	Genome Res	2011
21811232	AlleleSeq: analysis of allele-specific expression and binding in a network framework.	Mol Syst Biol	2011