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Author Details

Deborah A Siegele
Texas A&M University, College Station
1979
45
25
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36598258Heterogeneous Distribution of Proton Motive Force in Nonheritable Antibiotic Resistance.mBio2023
37341958Takashi Yura: pioneer, visionary scientist, friend.Cell Stress Chaperones2023
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
34710081Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).PLoS Comput Biol2021
33561236Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12.G3 (Bethesda)2021
30407590ECO, the Evidence & Conclusion Ontology: community standard for evidence information.Nucleic Acids Res2019
31307550Phenotype annotation with the ontology of microbial phenotypes (OMP).J Biomed Semantics2019
27812948The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations.Methods Mol Biol2017
24285306PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.Nucleic Acids Res2014
25433798An ontology for microbial phenotypes.BMC Microbiol2014
23161678Gene Ontology annotations and resources.Nucleic Acids Res2013
24358019Heat shock transcription factor Ͽ32 co-opts the signal recognition particle to regulate protein homeostasis in E. coli.PLoS Biol2013
22110029GONUTS: the Gene Ontology Normal Usage Tracking System.Nucleic Acids Res2012
22064863EcoliWiki: a wiki-based community resource for Escherichia coli.Nucleic Acids Res2012
19833773A previously uncharacterized gene, yjfO (bsmA), influences Escherichia coli biofilm formation and stress response.Microbiology (Reading)2010
20546312Mutations in the flhD gene of Escherichia coli K-12 do not cause the reported effect on cell division.FEMS Microbiol Lett2010
19576778What we can learn about Escherichia coli through application of Gene Ontology.Trends Microbiol2009
18535227The emerging world of wikis.Science2008
19160513High-throughput, quantitative analyses of genetic interactions in E. coli.Nat Methods2008
16289704Construction of an inducible, pfkA and pfkB deficient strain of Escherichia coli for the expression and purification of phosphofructokinase from bacterial sources.Protein Expr Purif2006
16159755Universal stress proteins in Escherichia coli.J Bacteriol2005
12519190Proteome analysis of Escherichia coli K-12 by two-dimensional native-state chromatography and MALDI-MS.Mol Microbiol2003
12603016MOPAC: motif finding by preprocessing and agglomerative clustering from microarrays.Pac Symp Biocomput2003
11244055Global analysis of Escherichia coli gene expression during the acetate-induced acid tolerance response.J Bacteriol2001
10812622Green fluorescent protein as a reporter of transcriptional activity in a prokaryotic system.Methods Enzymol2000
9484896Genetic analysis of the stationary phase-induced mcb operon promoter in Escherichia coli.Mol Microbiol1998
9223333Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations.Proc Natl Acad Sci U S A1997
8892804The stationary-phase-exit defect of cydC (surB) mutants is due to the lack of a functional terminal cytochrome oxidase.J Bacteriol1996
8892840Escherichia coli proteins synthesized during recovery from starvation.J Bacteriol1996
7681219Microbial competition: Escherichia coli mutants that take over stationary phase cultures.Science1993
8257118The stationary phase of the bacterial life cycle.Annu Rev Microbiol1993
8276245Isolation and characterization of an Escherichia coli mutant defective in resuming growth after starvation.Genes Dev1993
1512209Cloning and sequencing of Escherichia coli murZ and purification of its product, a UDP-N-acetylglucosamine enolpyruvyl transferase.J Bacteriol1992
1643661Polypeptides containing highly conserved regions of transcription initiation factor sigma 70 exhibit specificity of binding to promoter DNA.Cell1992
1729229Life after log.J Bacteriol1992
2661828Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase.J Mol Biol1989
2846853Mutations in rpoD, the gene encoding the sigma 70 subunit of Escherichia coli RNA polymerase, that increase expression of the lac operon in the absence of CAP-cAMP.J Mol Biol1988
2989542The terminase of bacteriophage lambda. Functional domains for cosB binding and multimer assembly.J Mol Biol1985
3936407The regulation of transcription initiation in bacteria.Annu Rev Genet1985
6096564A functional domain of bacteriophage lambda terminase for prohead binding.J Mol Biol1984
6226144The head genes of bacteriophage 21.Virology1983
6211394Cosmid DNA packaging in vivo.Gene1982
6460254Bacteriophage lambda and 21 packaging specificities.Prog Clin Biol Res1981
419690Packaging of the bacteriophage lambda chromosome: dependence of cos cleavage on chromosome length.Virology1979
419695Packaging of the bacteriophage lambda chromosome: a role for base sequences outside cos.Virology1979
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Collaborators

Texas A&M University and Texas Agrilife Research, College Station
Co-authored papers 17
University of California san francisco
Co-authored papers 7
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 6
Texas A&M University, College Station
Co-authored papers 5
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 5
Texas A&M University, College Station
Co-authored papers 4
Texas A&M University, College Station
Co-authored papers 4
Lawrence Berkeley National Laboratory
Co-authored papers 3
University College London, Institute for Cardiovascular Science
Co-authored papers 3
Microbial Sciences Institute, Yale University
Co-authored papers 3
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 3
University of Geneva
Co-authored papers 3
University of Southern California
Co-authored papers 3
Carnegie Institution for Science
Co-authored papers 3
University of Southern California
Co-authored papers 3
Center for Genetic Medicine, Northwestern University.
Co-authored papers 2
University of Cambridge
Co-authored papers 2
University of Cambridge
Co-authored papers 2
Stanford University
Co-authored papers 2
University of Maryland
Co-authored papers 2
Stanford University
Co-authored papers 2
Centre Medical Universitaire
Co-authored papers 2
Harvard Medical School
Co-authored papers 2
carnegie mellon university
Co-authored papers 2
carnegie mellon university
Co-authored papers 2
carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4
Co-authored papers 2
University of Arizona
Co-authored papers 2
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
California Institute of Technology
Co-authored papers 2
carnegie mellon university
Co-authored papers 2