Author details

Full Name

Lindsay G Cowell

Affiliation

University of Texas Southwestern Medical Center

ORCID

Career Start Year

1998

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36881590	Dynamic kernel matching for non-conforming data: A case study of T cell receptor datasets.	PLoS One	2023
37712756	VH2+ Antigen-Experienced B Cells in the Cerebrospinal Fluid Are Expanded and Enriched in Pediatric Anti-NMDA Receptor Encephalitis.	J Immunol	2023
37558123	Neuronal binding by antibodies can be influenced by low pH stress during the isolation procedure.	J Immunol Methods	2023
37601407	Neuron-binding antibody responses are associated with Black ethnicity in multiple sclerosis during natalizumab treatment.	Brain Commun	2023
37055337	Factors Associated With Receipt of Molecular Testing and its Impact on Time to Initial Systemic Therapy in Metastatic Non-Small Cell Lung Cancer.	Clin Lung Cancer	2023
37388275	AIRR community curation and standardised representation for immunoglobulin and T cell receptor germline sets.	Immunoinformatics (Amst)	2023
34525470	Burden of Renal Cysts Imaging: A Survey of Patients among the Greater Plains Collaborative.	Urol Int	2022
35389977	Cardiac Complications After SARS-CoV-2 Infection and mRNA COVID-19 Vaccination - PCORnet, United States, January 2021-January 2022.	MMWR Morb Mortal Wkly Rep	2022
35622339	Data Sharing and Reuse: A Method by the AIRR Community.	Methods Mol Biol	2022
35622338	Immune Repertoire Analysis on High-Performance Computing Using VDJServer V1: A Method by the AIRR Community.	Methods Mol Biol	2022
35119459	Prevalence of Select New Symptoms and Conditions Among Persons Aged Younger Than 20 Years and 20 Years or Older at 31 to 150 Days After Testing Positive or Negative for SARS-CoV-2.	JAMA Netw Open	2022
33270909	Blood-based biomarkers of human papillomavirus-associated cancers: A systematic review and meta-analysis.	Cancer	2021
33868241	T Cell Receptor Repertoires Acquired <i>via</i> Routine Pap Testing May Help Refine Cervical Cancer and Precancer Risk Estimates.	Front Immunol	2021
33777034	TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors.	Front Immunol	2021
34551906	Outcome and Immune Correlates of a Phase II Trial of High-Dose Interleukin-2 and Stereotactic Ablative Radiotherapy for Metastatic Renal Cell Carcinoma.	Clin Cancer Res	2021
34848502	CSF-Derived CD4<sup>+</sup> T-Cell Diversity Is Reduced in Patients With Alzheimer Clinical Syndrome.	Neurol Neuroimmunol Neuroinflamm	2021
34187842	Effect of the Affordable Care Act on diabetes care at major health centers: newly detected diabetes and diabetes medication management.	BMJ Open Diabetes Res Care	2021
34275487	The Infectious Disease Ontology in the age of COVID-19.	J Biomed Semantics	2021
34127826	Reconstituting T cell receptor selection in-silico.	Genes Immun	2021
32134923	Biophysicochemical motifs in T cell receptor sequences as a potential biomarker for high-grade serous ovarian carcinoma.	PLoS One	2020
33693395	The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons.	Front Big Data	2020
31888887	The Diagnostic, Prognostic, and Therapeutic Potential of Adaptive Immune Receptor Repertoire Profiling in Cancer.	Cancer Res	2020
30622114	Biophysicochemical Motifs in T-cell Receptor Sequences Distinguish Repertoires from Tumor-Infiltrating Lymphocyte and Adjacent Healthy Tissue.	Cancer Res	2019
30799908	Machine Learning on Sequential Data Using a Recurrent Weighted Average.	Neurocomputing (Amst)	2019
29867956	VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.	Front Immunol	2018
29944754	iReceptor: A platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories.	Immunol Rev	2018
27730299	Peripheral VH4+Â plasmablasts demonstrate autoreactive B cell expansion toward brain antigens in early multiple sclerosis patients.	Acta Neuropathol	2017
29322913	Cell type discovery and representation in the era of high-content single cell phenotyping.	BMC Bioinformatics	2017
29144493	Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data.	Nat Immunol	2017
29020925	VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data.	BMC Bioinformatics	2017
29163494	Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data.	Front Immunol	2017
28882107	Statistical classifiers for diagnosing disease from immune repertoires: a case study using multiple sclerosis.	BMC Bioinformatics	2017
27005435	Individual heritable differences result in unique cell lymphocyte receptor repertoires of naÃ¯ve and antigen-experienced cells.	Nat Commun	2016
26547365	iWAS--A novel approach to analyzing Next Generation Sequence data for immunology.	Cell Immunol	2016
27766961	VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.	BMC Bioinformatics	2016
26172868	MSPrecise: A molecular diagnostic test for multiple sclerosis using next generation sequencing.	Gene	2015
26388983	owlcpp: a C++ library for working with OWL ontologies.	J Biomed Semantics	2015
26234156	RAG Represents a Widespread Threat to the Lymphocyte Genome.	Cell	2015
24524581	A genome-wide association study of variants associated with acquisition of Staphylococcus aureus bacteremia in a healthcare setting.	BMC Infect Dis	2014
25278930	The antibody genetics of multiple sclerosis: comparing next-generation sequencing to sanger sequencing.	Front Neurol	2014
23515080	CD19-targeted T cells rapidly induce molecular remissions in adults with chemotherapy-refractory acute lymphoblastic leukemia.	Sci Transl Med	2013
24551353	Design and evaluation of a bacterial clinical infectious diseases ontology.	AMIA Annu Symp Proc	2013
23594958	Expansion of CD27high plasmablasts in transverse myelitis patients that utilize VH4 and JH6 genes and undergo extensive somatic hypermutation.	Genes Immun	2013
23427646	Ontology for vector surveillance and management.	J Med Entomol	2013
22690378	Haplotype Association Mapping Identifies a Candidate Gene Region in Mice Infected With Staphylococcus aureus.	G3 (Bethesda)	2012
20206294	Towards an ontological representation of resistance: the case of MRSA.	J Biomed Inform	2011
21208450	Logical development of the cell ontology.	BMC Bioinformatics	2011
20123131	Hematopoietic cell types: prototype for a revised cell ontology.	J Biomed Inform	2011
20824097	Two genes on A/J chromosome 18 are associated with susceptibility to Staphylococcus aureus infection by combined microarray and QTL analyses.	PLoS Pathog	2010
20812237	Memory B cells from a subset of treatment-naÃ¯ve relapsing-remitting multiple sclerosis patients elicit CD4(+) T-cell proliferation and IFN-Î³ production in response to myelin basic protein and myelin oligodendrocyte glycoprotein.	Eur J Immunol	2010

1 - 50 of 68

Melissa L Smith

University of Louisville

Career Start Year 2016

Number of shared co-authors 0

Eric Shifrut

Gladstone-UCSF Institute of Genomic Immunology

Career Start Year 2012

Number of shared co-authors 0

Alexander F Rosenberg

University of Alabama at Birmingham Birmingham

Career Start Year 2011

Number of shared co-authors 2

Thiago Y Oliveira

The Rockefeller University

Career Start Year 2010

Number of shared co-authors 0

Ilka Hoof

LEO Pharma

Career Start Year 2007

Number of shared co-authors 7

Kristen K Dang

Benaroya Research Institute at Virginia Mason

Career Start Year 2006

Number of shared co-authors 2

Fabio Zanini

Stanford University

Career Start Year 2006

Number of shared co-authors 0

Nicolas Rapin

Rigshospitalet, University of Copenhagen

Career Start Year 2006

Number of shared co-authors 2

Raul Rabadan

Columbia University Vagelos College of Physicians and Surgeons

Career Start Year 2006

Number of shared co-authors 1

Maria Chikina

University of Pittsburgh

Career Start Year 2005

Number of shared co-authors 2

David S DeLuca

Hannover Medical School

Career Start Year 2004

Number of shared co-authors 7

Andrew T Girvin

Career Start Year 2003

Number of shared co-authors 0

Benjamin D Greenbaum

Memorial Sloan Kettering Cancer Center

Career Start Year 2003

Number of shared co-authors 0

Vladimir Jojic

Calico Life Sciences LLC

Career Start Year 2003

Number of shared co-authors 0

David J Lynn

South Australian Health and Medical Research Institute

Career Start Year 2002

Number of shared co-authors 2

Julie A McMurry

University of Colorado - Anschutz Medical Campus

Career Start Year 2002

Number of shared co-authors 3

Ning Jiang

The University of Texas at Austin

Career Start Year 2000

Number of shared co-authors 1

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 2

Sarah A Teichmann

Wellcome Sanger Institute

Career Start Year 1996

Number of shared co-authors 3

Robert A Holt

BC Cancer Research Institute

Career Start Year 1996

Number of shared co-authors 1

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 3

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 0

Alejandro A Sch??ffer

National Cancer Institute, National Institutes of Health

Career Start Year 1993

Number of shared co-authors 0

Vivian H Gersuk

Center for Systems Immunology, Benaroya Research Institute

Career Start Year 1993

Number of shared co-authors 0

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 1

Nir Hacohen

Broad Institute of MIT and Harvard

Career Start Year 1989

Number of shared co-authors 1

Gustavo Glusman

Institute for Systems Biology

Career Start Year 1988

Number of shared co-authors 3

Vincent Ferretti

Ontario Institute for Cancer Research

Career Start Year 1986

Number of shared co-authors 0

Sean Davis

Johns Hopkins School of Medicine, National Cancer Institute, Princeton University, University of Colorado Anschutz Medical Campus, University of Pittsburgh, University of Washington

Career Start Year 1974

Number of shared co-authors 1

Leroy Hood

Center for Phenomic Health, The Buck Institute for Research on Aging

Career Start Year 1961

Number of shared co-authors 1

row(s) 1 - 30 of 30

Benjamin M Greenberg

The University of Texas Southwestern Medical Center

Co-authored papers 8

Richard H Scheuermann

J. Craig Venter Institute

Co-authored papers 6

Bjoern Peters

University of Washington School of Medicine

Co-authored papers 5

Anne E Lieberman

Duke University

Co-authored papers 4

Nishanth Marthandan

Simon Fraser University

Co-authored papers 3

Jasmin A Tiro

Co-authored papers 3

William K Scott

John P. Hussman Institute for Human Genomics.

Co-authored papers 3

Sun-Hee Ahn

The Warren Alpert Medical School of Brown University/Rhode Island Hospital

Co-authored papers 3

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 3

John M Fonner

Co-authored papers 3

Charlotte L Nelson

Duke Clinical Research Institute

Co-authored papers 3

Vance G Fowler

Duke University School of Medicine

Co-authored papers 3

Anna Maria Masci

Duke University School of Medicine

Co-authored papers 3