Author details

Full Name

Sylvain Foissac

Affiliation

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36909938	Enhancer/gene relationships: Need for more reliable genome-wide reference sets.		2023
37850035	TAGADA: a scalable pipeline to improve genome annotations with RNA-seq data.		2023
34675966	Major Reorganization of Chromosome Conformation During Muscle Development in Pig.	Frontiers in Genetics	2021
33911173	Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.	Scientific Reports	2021
34262593	RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and -Regulation Analysis by Allele-Specific Expression in Livestock Species.	Frontiers in Genetics	2021
33235280	An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.	Scientific Reports	2020
31884969	Multi-species annotation of transcriptome and chromatin structure in domesticated animals.	BMC Biology	2019
28073357	Long noncoding RNA repertoire in chicken liver and adipose tissue.	Genetics Selection Evolution	2017
29121641	Identification of a t(3;4)(p1.3;q1.5) translocation breakpoint in pigs using somatic cell hybrid mapping and high-resolution mate-pair sequencing.	PLoS ONE	2017
27943167	Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis.	Methods in Molecular Biology	2017
27662878	Bioinformatics Pipeline for Transcriptome Sequencing Analysis.	Methods in Molecular Biology	2017
26490224	Modeling of autosomal-dominant retinitis pigmentosa in Caenorhabditis elegans uncovers a nexus between global impaired functioning of certain splicing factors and cell type-specific apoptosis.	RNA	2015
25577392	Analysis of alternative splicing events in custom gene datasets by AStalavista.	Methods in Molecular Biology	2015
25854118	Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.	Genome Biol	2015
24350644	An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog.	BMC Genomics	2013
22238572	Evidence for transcript networks composed of chimeric RNAs in human cells.	PLoS One	2012
22955620	Landscape of transcription in human cells.	Nature	2012
20671709	New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism.	Nature	2010
21145465	Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation.	Cell	2010
18267074	A combinatorial code for CPE-mediated translational control.	Cell	2008
18688268	A general definition and nomenclature for alternative splicing events.	PLoS Comput Biol	2008
18500348	Efficient targeted transcript discovery via array-based normalization of RACE libraries.	Nat Methods	2008
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17567994	Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions.	Genome Res	2007
17485470	ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets.	Nucleic Acids Research	2007
15705189	Integrating alternative splicing detection into gene prediction.	BMC Bioinformatics	2005
12824408	EUGENE'HOM: A generic similarity-based gene finder using multiple homologous sequences.	Nucleic Acids Research	2003