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Author Details

Joshua E Elias
Addenbrooke's Hospital, University of Cambridge
1985
153
45
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37201912Extracellular vesicles in systemic juvenile idiopathic arthritis.J Leukoc Biol2023
37910793Cell Size Contributes to Single-Cell Proteome Variation.J Proteome Res2023
37550758metaSpectraST: an unsupervised and database-independent analysis workflow for metaproteomic MS/MS data using spectrum clustering.Microbiome2023
37546722Metabolomic rearrangement controls the intrinsic microbial response to temperature changes.bioRxiv2023
37461541SARS-CoV-2 Nsp1 regulates translation start site fidelity to promote infection.bioRxiv2023
35051349Establishment and characterization of stable, diverse, fecal-derived in vitro microbial communities that model the intestinal microbiota.Cell Host Microbe2022
35466441ZSCAN1 Autoantibodies Are Associated with Pediatric Paraneoplastic ROHHAD.Ann Neurol2022
36417913Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation.Mol Cell2022
36133920Delineation of proteome changes driven by cell size and growth rate.Front Cell Dev Biol2022
35987199Increasing cell size remodels the proteome and promotes senescence.Mol Cell2022
33758004Activation of the GPR35 pathway drives angiogenesis in the tumour microenvironment.Gut2022
35085787Tuning DO:DM Ratios Modulates MHC Class II Immunopeptidomes.Mol Cell Proteomics2022
35173144An efficient urine peptidomics workflow identifies chemically defined dietary gluten peptides from patients with celiac disease.Nat Commun2022
33331781Automated Ligand Purification Platform Accelerates Immunopeptidome Analysis by Mass Spectrometry.J Proteome Res2021
33785742Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments.Nat Commun2021
33866806Protein aggregation and the evolution of stress resistance in clinical yeast.Philos Trans R Soc Lond B Biol Sci2021
34880498Exercise plasma boosts memory and dampens brain inflammation via clusterin.Nature2021
34017121Repression of CTSG, ELANE and PRTN3-mediated histone H3 proteolytic cleavage promotes monocyte-to-macrophage differentiation.Nat Immunol2021
33936100An Integrated Genomic, Proteomic, and Immunopeptidomic Approach to Discover Treatment-Induced Neoantigens.Front Immunol2021
34117124Starvation induces shrinkage of the bacterial cytoplasm.Proc Natl Acad Sci U S A2021
34256014Gut-microbiota-targeted diets modulate human immune status.Cell2021
31499250Proteomic Discovery of Stool Protein Biomarkers for Distinguishing Pediatric Inflammatory Bowel Disease Flares.Clin Gastroenterol Hepatol2020
32606025High-Throughput Stool Metaproteomics: Method and Application to Human Specimens.mSystems2020
32612231Physiological blood-brain transport is impaired with age by a shift in transcytosis.Nature2020
32611769Methyltransferase-like 21C (METTL21C) methylates alanine tRNA synthetase at Lys-943 in muscle tissue.J Biol Chem2020
32442403SETD5-Coordinated Chromatin Reprogramming Regulates Adaptive Resistance to Targeted Pancreatic Cancer Therapy.Cancer Cell2020
32410728Inter-domain dynamics drive cholesterol transport by NPC1 and NPC1L1 proteins.Elife2020
32171435A novel antibody-cell conjugation method to enhance and characterize cytokine-induced killer cells.Cytotherapy2020
30581143Genome-wide CRISPR Analysis Identifies Substrate-Specific Conjugation Modules in ER-Associated Degradation.Mol Cell2019
31921850Multiple Layers of Phospho-Regulation Coordinate Metabolism and the Cell Cycle in Budding Yeast.Front Cell Dev Biol2019
31611695Predicting HLA class II antigen presentation through integrated deep learning.Nat Biotechnol2019
31527793Enterovirus pathogenesis requires the host methyltransferase SETD3.Nat Microbiol2019
31578417Binding to medium and long chain fatty acyls is a common property of HEAT and ARM repeat modules.Sci Rep2019
31462662Latent-period stool proteomic assay of multiple sclerosis model indicates protective capacity of host-expressed protease inhibitors.Sci Rep2019
31291378Acute myeloid leukemia immunopeptidome reveals HLA presentation of mutated nucleophosmin.PLoS One2019
30936560TagGraph reveals vast protein modification landscapes from large tandem mass spectrometry datasets.Nat Biotechnol2019
30626964SETD3 is an actin histidine methyltransferase that prevents primary dystocia.Nature2019
30626644Ribosomal protein RPL26 is the principal target of UFMylation.Proc Natl Acad Sci U S A2019
30545830B-cell lymphomas present immunoglobulin neoantigens.Blood2019
30612740METTL13 Methylation of eEF1A Increases Translational Output to Promote Tumorigenesis.Cell2019
29156507Liver transplantation in adults with liver disease due to common variable immunodeficiency leads to early recurrent disease and poor outcome.Liver Transpl2018
30104359Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial α-helical membrane anchors.Proc Natl Acad Sci U S A2018
30212465Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites.PLoS Biol2018
29906449Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota.Cell2018
30206138Developmental phosphoproteomics identifies the kinase CK2 as a driver of Hedgehog signaling and a therapeutic target in medulloblastoma.Sci Signal2018
29385081Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.Proteomes2018
29775058Multiple Click-Selective tRNA Synthetases Expand Mammalian Cell-Specific Proteomics.J Am Chem Soc2018
29493099T-Cell Immunopeptidomes Reveal Cell Subtype Surface Markers Derived From Intracellular Proteins.Proteomics2018
29791771Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE).Proteomics2018
28040698The Prenylated Proteome of <i>Plasmodium falciparum</i> Reveals Pathogen-specific Prenylation Activity and Drug Mechanism-of-action.Mol Cell Proteomics2017
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Collaborators

Steven P Gygi
Harvard Medical School
Co-authored papers 23
James Done
Center for Personalized Medicine, Children's Hospital Los Angeles
Co-authored papers 21
Silvia Zucchelli
INFN Sezione di Bologna and University of Bologna
Co-authored papers 20
Or Gozani
Stanford University
Co-authored papers 11
Justin L Sonnenburg
Stanford University
Co-authored papers 10
Kerwyn Casey Huang
Stanford University, Stanford University School of Medicine
Co-authored papers 7
Wilhelm Haas
Co-authored papers 6
Mark M Davis
Co-authored papers 5
Judit Vill??n
University of Washington
Co-authored papers 5
Jan E Carette
Stanford University School of Medicine
Co-authored papers 4
Yaw Shin Ooi
Duke-NUS Medical School
Co-authored papers 3
Alex W Wilkinson
Stanford University
Co-authored papers 3
Tony Wyss-Coray
Stanford University
Co-authored papers 3
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Stanford University Medical Center
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Stanford University
Co-authored papers 3
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Genentech Inc.
Co-authored papers 2
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Amgen Inc.
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Frederick P Roth
University of Toronto
Co-authored papers 2
Claude M Nagamine
Stanford University School of Medicine
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Francis D Gibbons
Preclinical and Translational Sciences, Inc.
Co-authored papers 2
Raul Andino
University of California san francisco
Co-authored papers 2
Anirban Maitra
The University of Texas MD Anderson Cancer Center
Co-authored papers 2
John Quackenbush
Harvard T. H. Chan School of Public Health
Co-authored papers 2
Peter Sarnow
Stanford University School of Medicine
Co-authored papers 2
K??vin Contrepois
Stanford University School of Medicine
Co-authored papers 2
Markus Müller
Co-authored papers 1
Xiao-Nan Li
Northwestern University
Co-authored papers 1
Purvesh Khatri
University of California San Francisco
Co-authored papers 1
Wolfgang Wagner
Center for Integrated Oncology Aachen Bonn Cologne Dusseldorf (CIO ABCD)
Co-authored papers 1
Edward L Huttlin
Harvard Medical School
Co-authored papers 1
Release 1.2